Autocycler: full read sets

This archive contains the full ONT and Illumina read sets for each genome included in the Autocycler benchmarking study. ONT reads were basecalled with Dorado v0.9.5 using the sup-v5 model. Basic quality control has been applied: minimum Q10 for ONT reads, fastp with default settings for Illumina reads. These reads were used both to generate the high-accuracy reference assemblies and as the source for the subsampled read sets used in benchmarking.

See github.com/rrwick/Autocycler-paper for more details.