md5sums (1.99 kB)
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Strelka2_sim-a_snvs.vcf.gz (3.79 MB)
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Strelka2_sim-b_snvs.vcf.gz (3.79 MB)
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Strelka2_sim-c_snvs.vcf.gz (3.78 MB)
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Strelka2_sim-d_snvs.vcf.gz (3.78 MB)
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Strelka2_sim-e_snvs.vcf.gz (3.75 MB)
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Strelka2_sim-f_snvs.vcf.gz (3.74 MB)
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Strelka2_sim-g_snvs.vcf.gz (3.66 MB)
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Strelka2_sim-h_snvs.vcf.gz (3.47 MB)
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Strelka2_sim-i_snvs.vcf.gz (3.47 MB)
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Strelka2_sim-j_snvs.vcf.gz (3.37 MB)
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Mutect2_sim-a_out.vcf.gz (2.2 MB)
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Mutect2_sim-b_out.vcf.gz (2.21 MB)
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Mutect2_sim-c_out.vcf.gz (2.18 MB)
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Mutect2_sim-d_out.vcf.gz (2.19 MB)
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Mutect2_sim-e_out.vcf.gz (2.1 MB)
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Mutect2_sim-f_out.vcf.gz (2.22 MB)
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Mutect2_sim-g_out.vcf.gz (1.88 MB)
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Mutect2_sim-h_out.vcf.gz (1.57 MB)
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Mutect2_sim-i_out.vcf.gz (1.57 MB)
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Called variants of simulated dataset
dataset
posted on 2021-08-16, 05:52 authored by Sebastian Hollizeck, Dineika Chandrananda, BENJAMIN SOLOMONBENJAMIN SOLOMON, SARAH-JANE DAWSONSARAH-JANE DAWSON, Stephen WongStephen WongThese are the variant calls made by Mutect2, Strelka2 and FreeBayes both in tumour normal pairwise analysis as well as with the newly proposed joint analysis.
The dataset these were called on can be found on doi:
which also contains the truth set of variants contained in the alignment files.
which also contains the truth set of variants contained in the alignment files.
