<p dir="ltr"><b>This article contains:</b></p><ol><li>ChloroScan outputs for 4 real metagenomes and 2 benchmarking metagenomes;</li><li>Marker gene database: orthofinder results, custom scripts and the files required during creating it. The detailed codes used in completing this can be found at: https://github.com/Andyargueasae/ChloroScan_reproducibility.</li><li>Orthofisher results of rbcL genes from six SAMEA2189670 bins: used to identify taxa of these bins via blastp against nonredundant protein database.</li></ol><p dir="ltr"><br></p>