EcOH: In silico serotyping of E. coli - Supplementary material
<p>This supplementary data accompanies the
manuscript "In silico serotyping of E. coli from short read data
identifies limited novel O loci but extensive diversity of O:H serotype
combinations within and between pathogenic lineages".<br>
<br>
Sequences used in the EcOH database are given in EcOH Supplementary Table 1. <br>
<br>
NCBI preliminary validation results are given in EcOH Supplementary Table 2. <br>
<br>
Validation of phenotype from genotype on 197 EPEC isolates are in EcOH Supplementary
Tables 3-5. <br>
<br>
Diversity analyses results on 1547 E. coli are given in EcOH Supplementary
Table 6. </p>
<p> </p>
<p>Supplementary Figures 1-3 are given in EcOH
Supplementary Figures. <br>
<br>
Sequences and annotations for the novel loci identified in GEMS and the ETEC
and GenomeTrakr datasets are given in GEMS_6novel_Oantigen.gbk and
GT_ETEC_32novel_Oantigen.gbk. Three O-antigens with variant alleles are in
Variants_prototypical_Oantigens.gbk.</p>
