DATASET
Klebs_NCBI_GenomeReport.csv (103.23 kB)
DATASET
Ecloacae_NCBI_GenomeReport.csv (13.89 kB)
DATASET
Ecoli_NCBI_GenomeReport.csv (215.06 kB)
DATASET
Pseudo_NCBI_GenomeReport.csv (43.9 kB)
DATASET
Acineto_NCBI_GenomeReport.csv (41.16 kB)
DATASET
Ecoli_PathogensReport.csv (2.03 MB)
DATASET
Enterobacter_PathogensReport.csv (396.64 kB)
DATASET
Pseudomonas_PathogensReport.csv (658.69 kB)
DATASET
Acineto_PathogensReport.csv (1.19 MB)
DATASET
Klebs_PathogensReport.csv (1.52 MB)
TEXT
Fig2_plots.R (10.33 kB)
.GZ
GC_by_spp.csv.gz (9.56 MB)
TEXT
README.txt (0.48 kB)
TEXT
IMNGS_ecological_distribution.R (2.83 kB)
ARCHIVE
IMNGS_Kp_fullLength_99.zip (3.41 MB)
ARCHIVE
IMNGS_AbV4_99.zip (1.79 MB)
ARCHIVE
IMNGS_Ecloacae_99.zip (3.25 MB)
ARCHIVE
IMNGS_PaV4_99.zip (2.1 MB)
ARCHIVE
IMNGS_Ecoli_99.zip (5.69 MB)
DATASET
IMNGS_group_assignments.csv (27.42 kB)
1/0
Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens
dataset
posted on 2018-04-08, 02:00 authored by KATHRYN HOLT, KELLY WYRES1) R code to parse data downloaded from NCBI to generate plots of genome size, genewise G+C content, AMR gene load and plasmid load for Gram negative opportunistic pathogens K. pneumoniae, E. coli, E. cloaceae, P. aeruginosa and A. baumannii.
2) Results of querying the IMNGS 16S database (imngs.org) for the above species, and R code to plot the frequency of detection of each species in samples of different source types.
