Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens

1) R code to parse data downloaded from NCBI to generate plots of genome size, genewise G+C content, AMR gene load and plasmid load for Gram negative opportunistic pathogens K. pneumoniae, E. coli, E. cloaceae, P. aeruginosa and A. baumannii. <div>2) Results of querying the IMNGS 16S database (imngs.org) for the above species, and R code to plot the frequency of detection of each species in samples of different source types.</div>