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UniMelb Eastern Quoll Reference Genome Preprint Repository

dataset
posted on 2023-09-06, 08:22 authored by CHARLES FEIGINCHARLES FEIGIN

Contains:
observations_map.r: Code used to plot eastern quoll observations on the map of Tasmania (Fig. 1b).

eastern_quoll_observation_records_gps_coords_filt.csv: Table of GPS coordinates representing eastern quoll sightings from the Tasmanian Natural Values Atlas (Fig. 1b).

ideogram.r: Code used to plot the heat map of gene annotations (Fig. 3a).

gene_count_histo_10mbp.bed: Bed file containing 10 megabase windows across the eastern quoll genome with the count of annotated genes (Fig. 3a).

Dasyurus_viverrinus_TARZ-13805.1_eggnog.gff: De novo annotation of the eastern quoll genome generated with funannotate and labelled with eggnog

Supplementary Tables S1-S6.xlsx: Supplementary tables referenced in manuscript. Each table is given in a sheet.

Supplementary File S1.docx: MAFFT alignment of dasyuromorph ASIP alignments

Supplementary File S2.docx: MAFFT alignment of the ASIP exon 1 region from the eastern quoll, yellow-footed antechinus and two Tasmanian devil genome assemblies.

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