Sarcoptes scabiei miRna regulation
Sarcoptes scabiei miRNA regulation
R-codes for the publication "Evidence that transcriptional alterations in Sarcoptes scabiei are under tight post-transcriptional (microRNA) control".
Description of Files
* runDeMrna.r: differential transcription for mRNA data using the software EdgeR
* runDeMir.r: differential transcription for miRNA data using the software EdgeR
* runDn.r: inferring genes downregulated by miRNAs using correlation analysis (generates heatmap images)
* runUp.r: inferring genes upregulated by miRNAs using correlation analysis (generates heatmap images)
* mrna.cnts: read count data for mRNA samples and replicates
* mir.cnts: read count data for miRNA samples and replicates
* pVals1000.rds: precalculated p-values for each miRNA-gene correlation
* mir.gff: GFF file to locate miRNAs in the genome